PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00986g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 718aa    MW: 80302.1 Da    PI: 6.3128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00986g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-1942142198
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+kvlt sd++++  l+l ++ + ++      +++k+ + +l+ +d+   +W++ + ++++++r++ltkGW++Fv  ++L +gD+
  Peinf101Scf00986g00010.1  42 FCKVLTASDTNSNWGLTLRRDDVIRCfppldiSKQKPIQ-DLIAKDLYDCEWRFSHVFQGQPRRHLLTKGWRKFVATKRLVAGDS 125
                               99****************************985566664.8******************************************** PP

                               EEEEE-SSSEE..EEEEE- CS
                        B3  80 vvFkldgrsefelvvkvfr 98 
                               v+F +    ++el+v+v+r
  Peinf101Scf00986g00010.1 126 VIFLR--GGNGELCVGVRR 142
                               ****4..378999****98 PP

2B360.33.4e-19277377198
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+kvlt sd++++  l+l ++ + ++      +++k+ + +l+ +d+   +W++ + ++++++r++ltkGW++Fv  ++L +gD+
  Peinf101Scf00986g00010.1 277 FCKVLTASDTNSNWGLTLRRDDVIRCfppldiSKQKPIQ-DLIAKDLYDCEWRFSHVFQGQPRRHLLTKGWRKFVATKRLVAGDS 360
                               99****************************985566664.8******************************************** PP

                               EEEEE-SSSEE..EEEEE- CS
                        B3  80 vvFkldgrsefelvvkvfr 98 
                               v+F +    ++el+v+v+r
  Peinf101Scf00986g00010.1 361 VIFLR--GGNGELCVGVRR 377
                               ****4..378999****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-3236156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2537147IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-1840142No hitNo description
PfamPF023622.8E-1642142IPR003340B3 DNA binding domain
SMARTSM010192.2E-1642144IPR003340B3 DNA binding domain
PROSITE profilePS5086311.06842144IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-32271391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-25272382IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-18275377No hitNo description
PfamPF023622.8E-16277377IPR003340B3 DNA binding domain
SMARTSM010192.2E-16277379IPR003340B3 DNA binding domain
PROSITE profilePS5086311.068277379IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MVESDTDEVY ARITLLPEKN QSEQTSAEAW CPEPLNSQLH SFCKVLTASD TNSNWGLTLR  60
RDDVIRCFPP LDISKQKPIQ DLIAKDLYDC EWRFSHVFQG QPRRHLLTKG WRKFVATKRL  120
VAGDSVIFLR GGNGELCVGV RRPAHQRYDV GSSLVSSQTV QGVLPVVSHA FATGSLFLVH  180
YQPRTSGCIL SLRKYLEPNR ETPSNPNLAQ IASDDLSTNH ISVNDLDCDV FSDIFLAPHS  240
HFVESTLETN RNGTGQSEQT SAEAWCPEPL NSQLHSFCKV LTASDTNSNW GLTLRRDDVI  300
RCFPPLDISK QKPIQDLIAK DLYDCEWRFS HVFQGQPRRH LLTKGWRKFV ATKRLVAGDS  360
VIFLRGGNGE LCVGVRRPAH QRYDVGSSLV SSQTVQGVLP VVSHAFATGS LFLVHYQPRT  420
SGCILSLRKY LEPNRETPSN PNLAQIASDD LSTNHISVND LDCDVFSDIF LAPHSHFVES  480
TLETNRNGTG VASTVPILLL DLEGWPESQR ESFPTYPQQP VPEPSMTTST SVQPTDTFQL  540
MCSYSNPNQP PTEVPSCGGE QVSWAGCQVA KRCLPILNRV IMRYPSTISG FKAVTGALQS  600
VYLEMLAKLI DLLEQTRIGS MKNMDQFQVI KQYLADLKFI GIDISWIETR LEQVDVVFKV  660
EKLIQHQHTL AHRIEETQFI LGQLQEEDGS VTKELEELTP KVGLSLPSKD CSILEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A7e-63243284282Auxin response factor 1
4ldw_A7e-63243284282Auxin response factor 1
4ldw_B7e-63243284282Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504321.10.0PREDICTED: uncharacterized protein LOC107822302, partial
SwissprotQ94JM33e-62ARFB_ARATH; Auxin response factor 2
TrEMBLA0A0B0NAI61e-66A0A0B0NAI6_G
STRINGVIT_02s0025g01740.t012e-63(Vitis vinifera)
STRINGPOPTR_0014s09560.12e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.32e-63auxin response factor 2